The 90 hp can probably be throttled down slow enough for trolling in most situations - may require some additional control hardware. Now the question is if you want a kicker as a spare 'get me home' motor. Some people don't like running up hours on the main and want the kicker to do that work, but as you suspect, there are real costs beyond the purchase of the motor: weight, complexity, rigging, security (surely nothing is stolen more often in the boating world than kicker motors).
In a lot of outboard lineups, the 8 hp, 9.9 and sometimes 15 hp are all built on the same platform, rated output is determined by fuel management. Some have a slightly different lower unit, but generally they will weigh the same within a couple of pounds. Ancillary hardware hanging off that transom is more significant: that electric start, power tilt/trim unit is gonna weigh a good bit more than a simple pull start manual tilt.
If you envisage that you'll be fishing areas with fast tidal currents, you'll want the torque of an 8 hp or 9.9, but a 6 hp would mostly do it for a 17 ft hull. Actually you could probably just add a second large deep cycle and go with an electric troller for silent operation and never a risk of bad gas. Would electric get you home from out in the middle of the Strait though? Ummm no